West-Life Virtual Research Environment Docs
  • Introduction
  • Data Management
  • Virtual Folder
    • User's guide
      • Settings
        • Import settings from another Virtual Folder
      • File Manager
      • File Picker
      • Related applications
        • Jupyter notebook
      • Metadata
    • Installation guide
      • Cloud installation
      • Local installation
      • Integration with SSO
    • Integration guide
      • Select File or Dir from Virtual Folder
      • Working with WEBDAV
      • Embedding Virtual Folder Component
      • Adding component into Virtual Folder
    • Developer's guide
      • Backend
      • Frontend - Web Application
      • Metadata and API
        • Dataset metadata and API
        • File metadata and API
      • Import Export Settings API
      • Related application and services
      • Untitled
  • Virtual Machines and Containers
    • Preparing vagrant VM template
    • Preparing docker container
  • Repository
    • Installation guide
      • Prerequisites
      • Automatic installation
      • Manual installation from source codes
    • User's guide
      • Scientist imports project proposal
      • Staff uploads data
      • Scientist works with dataset
      • Metadata
    • Developer's guide
      • Metadata generation
      • ARIA integration
Powered by GitBook
On this page

Last updated 6 years ago

Virtual folder can be installed with optional software, application and services.

Jupyter binary installation

You may use binary installation from /cvmfs/west-life.egi.eu repository, to do that, create link /opt/jupyter to e.g. the latest version:

Then enable the jupyter tasks in metadata service configuration /etc/systemd/system/westlife-metadata.service by adding VF_ALLOW_LAB=true VF_ALLOW_NOTEBOOK=true. See Manual configuration for details.

Jupyter local installation

In order to install Jupyter in local installation during bootstrap of VF - set local variable ALLOW_JUPYTER=1before launching bootstrap, i.e.:

Jupyter manual installation

Jupyter notebook and Jupyter Lab can be installed manually, see/edit the bootstrap/bootstrapJupyter.sh and set local variable ALLOW_JUPYTER=1before launching this script:

Python environment with jupyter and all other dependencies will be installed by default at /opt/jupyter path. You need then to enable tasks in virtual folder UI:

  • enable jupyter notebook and jupyter lab task in metadata service configuration /etc/systemd/system/westlife-metadata.service by adding VF_ALLOW_LAB=true VF_ALLOW_NOTEBOOK=true:

[Service]
...
Environment=VF_ALLOW_LAB=true
Environment=VF_ALLOW_NOTEBOOK=true
...
  • Jupyter binary installation
  • Jupyter local installation
  • Jupyter manual installation
PreviousImport Export Settings APINextUntitled
  1. Virtual Folder
  2. Developer's guide

Related application and services

ln -s /cvmfs/west-life.egi.eu/software/jupyter/latest /opt/jupyter
# define where VF sources are located 
# export WP6SRC=/vagrant
export ALLOW_JUPYTER=1 # enable jupyter
$WP6SRC/bootstrap/bootstrap.sh
# define where VF sources are located 
# export WP6SRC=/vagrant
export ALLOW_JUPYTER=1 # enable jupyter
$WP6SRC/bootstrap/bootstrapJupyter.sh