West-Life Virtual Research Environment Docs
  • Introduction
  • Data Management
  • Virtual Folder
    • User's guide
      • Settings
        • Import settings from another Virtual Folder
      • File Manager
      • File Picker
      • Related applications
        • Jupyter notebook
      • Metadata
    • Installation guide
      • Cloud installation
      • Local installation
      • Integration with SSO
    • Integration guide
      • Select File or Dir from Virtual Folder
      • Working with WEBDAV
      • Embedding Virtual Folder Component
      • Adding component into Virtual Folder
    • Developer's guide
      • Backend
      • Frontend - Web Application
      • Metadata and API
        • Dataset metadata and API
        • File metadata and API
      • Import Export Settings API
      • Related application and services
      • Untitled
  • Virtual Machines and Containers
    • Preparing vagrant VM template
    • Preparing docker container
  • Repository
    • Installation guide
      • Prerequisites
      • Automatic installation
      • Manual installation from source codes
    • User's guide
      • Scientist imports project proposal
      • Staff uploads data
      • Scientist works with dataset
      • Metadata
    • Developer's guide
      • Metadata generation
      • ARIA integration
Powered by GitBook
On this page
  1. Virtual Folder
  2. User's guide
  3. Related applications

Jupyter notebook

PreviousRelated applicationsNextMetadata

Last updated 6 years ago

Jupyter notebook and Jupyter lab is optionally available for local deployment of Virtual Folder. It gives access to console and local installation of python, thus, it's up to local system administrator to allow only user's with this kind of permission.

In order to start Jupyter or Jupyter Lab - click on small icon in Section 'Available local services'. Note that it may take several seconds or several tens of seconds until the selected service actually boots and is available. Once started, the services has access to mounted virtual folder.

The Python 3 and following Python libraries are installed (common dependencies are not listed (numpy, matplotlib, ...)):jupyter pymc3 r-irkernel r=3.3.2 tornado=4.5.3 rdkit scikit-learn seaborn keras mkl pandas pillow pydot scipy tensorflow scikit-image line_profiler memory_profiler numexpr pandas-datareader netcdf4 pivottablejs jupyterlab conda-forge bqplot mpld3 ipython-sql nglview ssbio sos sos-notebook prov auto-sklearn

References:

Technical documentation howto install jupyter inside virtual folder at Developer's guide .

Project Jupyter -

Jupyter Lab -

Related application and services
http://jupyter.org/
https://jupyterlab.readthedocs.io/en/stable/